Introduction | 2 Installation | 2.1 Installation via CRAN | 2.3 Compatibility issues | 3 Getting Started | Prostate Data | Function: txtsummary | Example with the prostate dataset | Function: continuous.test | Comparing Continuous Variables Across Groups | Function Parameters | Example 1: Wilcoxon Rank-Sum Test (2 Groups, Non-Parametric) | Function: categorical.test | Comparing Categorical Variables Across Groups | Example 1: Unordered Categorical Variable (Fisher's Exact Test) | Example 2: Ordered Categorical Variable (Jonckheere–Terpstra Test) | Function: correlation.test | Function: multi_analysis | Function: intersect | Function: frequency_matching | Conclusion
Package: clinical 0.1
clinical: Clinical Metadata Exploration and Feature Matching
A collection of tools to easily analyze clinical data, including functions for correlation analysis, and statistical testing. The package facilitates the integration of clinical metadata with other omics layers, enabling exploration of quantitative variables. It also includes the utility for frequency matching samples across a dataset based on patient variables.
Authors:
clinical_0.1.tar.gz
clinical_0.1.zip(r-4.7)clinical_0.1.zip(r-4.6)clinical_0.1.zip(r-4.5)
clinical_0.1.tgz(r-4.6-any)clinical_0.1.tgz(r-4.5-any)
clinical_0.1.tar.gz(r-4.7-any)clinical_0.1.tar.gz(r-4.6-any)
clinical_0.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
clinical/json (API)
| # Install 'clinical' in R: |
| install.packages('clinical', repos = c('https://tkcaccia.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/tkcaccia/clinical/issues
Datasets:
- prostate - Clinical Data of a Cohort of Prostate Cancer Patiens
Last updated from:48ddc7dbaf. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 134 | ||
| source / vignettes | OK | 174 | ||
| linux-release-x86_64 | OK | 128 | ||
| macos-release-arm64 | OK | 158 | ||
| macos-oldrel-arm64 | OK | 168 | ||
| windows-devel | OK | 98 | ||
| windows-release | OK | 87 | ||
| windows-oldrel | OK | 111 | ||
| wasm-release | OK | 101 |
Exports:add_analysisas.data.matrixcategorical.testcontinuous.testcorrelation.testfrequency_matchinginitializationintersectmulti_analysistxtsummary
Dependencies:clinfunlatticeMatrixminervamvtnormRcppRcppArmadillo
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Add analysis results to a clinical object | add_analysis |
| Convert Character Matrix to Numeric Matrix | as.data.matrix |
| Categorical Information | categorical.test |
| Continuous Information | continuous.test |
| Continuous Information | correlation.test |
| Frequency Matching | frequency_matching |
| Initialize a Clinical Table Object | initialization |
| Intersection of Multiple Vectors | intersect |
| Continuous Information | multi_analysis |
| Clinical Data of a Cohort of Prostate Cancer Patiens | prostate |
| Median and Coefficient Interval | txtsummary |
