{ "_id": "6af72c84be2268deb4a3f882", "Package": "PathoFMPred", "Type": "Package", "Title": "Tumour Feature Models from Pathology Representations", "Version": "0.1.0", "URL": "https://github.com/tkcaccia/PathoFMPred", "BugReports": "https://github.com/tkcaccia/PathoFMPred/issues", "Authors@R": "c(\nperson(\"Aamilah\", \"Ismail\", role = \"aut\"),\nperson(\"Martin\", \"Ocharo\", role = \"aut\"),\nperson(\"Giulia\", \"Canarutto\", role = \"aut\"),\nperson(\"Moussa Kassim\", \"Mohamed\", role = \"aut\", email = \"moussa.kassim@icgeb.org\"),\nperson(\"Dalia\", \"Ahmed\", role = \"aut\", email = \"dalia.ahmed@icgeb.org\"),\nperson(\"Brendon\", \"Price\", role = \"aut\"),\nperson(\"Dupe\", \"Ojo\", role = \"aut\", email = \"dupe.ojo@icgeb.org\"),\nperson(\"Ekene Emmanuel\", \"Nweke\", role = \"aut\"),\nperson(\"Alessia\", \"Vignoli\", role = \"aut\",\nemail = \"vignoli@cerm.unifi.it\"),\nperson(\"Silvano\", \"Piazza\", role = \"aut\"),\nperson(\"Dinesh\", \"Gupta\", role = \"aut\"),\nperson(\"Leonardo\", \"Tenori\", role = \"aut\",\nemail = \"tenori@cerm.unifi.it\"),\nperson(\"Stefano\", \"Cacciatore\", role = c(\"aut\", \"cre\"),\nemail = \"tkcaccia@gmail.com\")\n)", "Description": "Builds and applies portable cancer-specific partial least\nsquares (PLS) regression and partial least squares with linear\ndiscriminant analysis (PLS-LDA) model collections from\npathology foundation-model representations. Feature and outcome\ntables are linked by explicit patient identifiers, repeated\nslide rows are pooled at patient level, and model development\nuses nested cross-validation before final fitting. The source\npackage contains no fitted foundation-model parameters,\nembeddings, patient-level data, or atlas registry. Users may\ndownload a separately licensed, checksum-verified Prov-GigaPath\ncollection after installation, or load authorized collections\nfrom local files. Outputs are research estimates without\nexternal-validation or clinical-use claims. The methods build\non Wold et al. (2001) and\nBarker and Rayens (2003) .", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "VignetteBuilder": "knitr", "Config/testthat/edition": "3", "Config/roxygen2/version": "8.1.0", "Config/pak/sysreqs": "cmake make libuv1-dev", "Repository": "https://tkcaccia.r-universe.dev", "Date/Publication": "2026-10-26 10:22:07 UTC", "RemoteUrl": "https://github.com/tkcaccia/pathofmpred", "RemoteRef": "HEAD", "RemoteSha": "154d3df487e8efe13810bdabb4a8376332e7550a", "NeedsCompilation": "no", "Packaged": { "Date": "2026-11-13 15:15:11 UTC", "User": "root" }, "Author": "Aamilah Ismail [aut],\nMartin Ocharo [aut],\nGiulia Canarutto [aut],\nMoussa Kassim Mohamed [aut],\nDalia Ahmed [aut],\nBrendon Price [aut],\nDupe Ojo [aut],\nEkene Emmanuel Nweke [aut],\nAlessia Vignoli [aut],\nSilvano Piazza [aut],\nDinesh Gupta [aut],\nLeonardo Tenori [aut],\nStefano Cacciatore [aut, cre]", "Maintainer": "Stefano Cacciatore ", "_user": "tkcaccia", "_type": "src", "_file": "PathoFMPred_0.1.0.tar.gz", 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